load_medications_idb

Load and return the IDB medications dataset (PHI).

Returns:

Name	Type	Description
data	Bunch	Dictionary-like object, with the following attributes. data : pandas DataFrame The data matrix.

Examples

from msk_cdm.datasets import connect_to_db
from msk_cdm.datasets.impact import load_medications_idb

# Connect to the database
auth_file = 'path/to/config.txt'
connect_to_db(auth_file=auth_file)

# Load the dataset
df_medications = load_medications_idb()

# Access the data
df = df_medications['data']

# Display the first few rows of the data
print(df.head())

Source code in msk_cdm/datasets/phi/idb/datasets_phi_idb.py

def load_medications_idb() -> Bunch:
    """Load and return the IDB medications dataset (PHI).

    Returns:
        data: Dictionary-like object, with the following attributes.

            - **data** : pandas DataFrame
                The data matrix.

    Examples
    --------
    ```python
    from msk_cdm.datasets import connect_to_db
    from msk_cdm.datasets.impact import load_medications_idb

    # Connect to the database
    auth_file = 'path/to/config.txt'
    connect_to_db(auth_file=auth_file)

    # Load the dataset
    df_medications = load_medications_idb()

    # Access the data
    df = df_medications['data']

    # Display the first few rows of the data
    print(df.head())
    ```
    """
    df = _loader._load_phi_idb_medications()
    data = Bunch(data=df)
    return data